Extract certificate from the SAML service provider metadata file as follows,
<X509Data>
<X509Certificate>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=
</X509Certificate>
</X509Data>
Copy extracted certificate to a new text file. Then add "-----BEGIN CERTIFICATE-----" and "-----END CERTIFICATE-----" statements as follows,
-----BEGIN CERTIFICATE-----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=
-----END CERTIFICATE-----
Save this file with .crt extension
Eg: mySP.crt
Now you can import this certificate to the wso2carbon.jks file as follows,
From the command line navigate to <IS_HOME>/repository/resources/security
Import certificate to your key store using following command, (pw: wso2carbon)
keytool -import -alias someAlias -file mySP.crt -keystore wso2carbon.jks
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